Genome In A Bottle - v2.0 Genome Stratifications (Deprecated)
type: Dataset
description: These stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. These v2.0 stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls. v2.0 stratifications have been deprecated and replaced by v3.0 genome-stratifications.
keyword: amerigeo
keyword: amerigeoss
keyword: ckan
keyword: geo
keyword: geoss
keyword: human-genomics-dna-sequencing-reference-materials
keyword: national
keyword: north-america
keyword: united-states
issued: 2020-07-20
modified: 2020-03-05T00:00:00
language: {en}
theme: Genomic measurements"
theme: Precision medicine"}
contact point: Organization
  fn: Justin Zook

US Migrating
type: Agent

GIAB FTP Site
type: Distribution
description: NIH-NCBI hosted FTP site provided to facilitate user access. Files on the FTP site are subject to change whereas files on data.nist.gov archived version of the files.
access URL: https://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release
issued: 2022-08-07T18:18:39.610370
modified: 2025-11-19T16:36:46.485938

Code repository
type: Distribution
description: Version controlled repository with code used to generate the stratification files.
access URL: https://github.com/genome-in-a-bottle/genome-stratifications
issued: 2022-08-07T18:18:39.610380
modified: 2025-11-19T16:36:46.486679

Web Resource
type: Distribution
description: GRCh37_notinrefseq_union_cds.bed.gz
media type: application/gzip
format: GZ
access URL: https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz
issued: 2022-08-07T18:18:39.610386
modified: 2025-11-19T16:36:46.487429

Text File
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media type: text/plain
format: TEXT
access URL: https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_notinrefseq_union_cds.bed.gz.sha256
issued: 2022-08-07T18:18:39.610392
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Web Resource
type: Distribution
description: GRCh37_refseq_cds.bed.gz
media type: application/gzip
format: GZ
access URL: https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/GRCh37_refseq_cds.bed.gz
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Text File
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media type: text/plain
format: TEXT
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issued: 2022-08-07T18:18:39.610404
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Web Resource
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description: create_GRCh37_cds_bed.Rmd
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access URL: https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.Rmd
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Text File
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format: TEXT
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PDF File
type: Distribution
description: create_GRCh37_cds_bed.pdf
media type: application/pdf
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access URL: https://data.nist.gov/od/ds/ark:/88434/mds2-2190/GRCh37/FunctionalRegions/create_GRCh37_cds_bed.pdf
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Text File
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Text File
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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Web Resource
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