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The ToxCast pipeline: updates to curve-fitting approaches and database structure
Supplemental files to accompany the manuscript: Feshuk et al., "The ToxCast Pipeline: Updates to Curve-fitting Approaches and Database Structure", DOI... -
Prioritization of chemicals for effects on steroidogenesis using an...
HT-H295R data was downloaded using the ToxCast pipeline (tcpl) R package and is publicly available. Multi-concentration level 0 data from invitrodb (version 3.1) were downloaded... -
Dataset for 'Signature Analysis of High-Throughput Transcriptomics Screening...
Dataset for Harrill, J.A. et al., 'Signature Analysis of High-Throughput Transcriptomics Screening Data for Mechanistic Inference and Chemical Grouping' published in... -
Minimal_Set_of_In_Vitro_ER_Agonist_Assays_Selection_RegToxPharm_Data
A dataset for the manuscript which demonstrates that it is possible to achieve levels of performance equivalent to the full 16 assay ER agonist model against both in vitro and... -
Analysis of the Effects of Cell Stress and Cytotoxicity on In Vitro Assay...
Chemical toxicity can arise from disruption of specific biomolecular functions or through more generalized cell stress and cytotoxicity-mediated processes. Here, concentration-... -
Data set for Kosnik et al
The zip file contains all data and scripts used for the material presented in the manuscript by Kosnik et al. This dataset is associated with the following publication: Kosnik,... -
High-throughput screening of chemical effects on steroidogenesis using H295R...
Disruption of steroidogenesis by environmental chemicals can result in altered hormone levels causing adverse reproductive and developmental effects. A high-throughput assay... -
HTTK: R Package for High-Throughput Toxicokinetics
Functions and data tables for simulation and statistical analysis of chemical toxicokinetics ("TK") as in Pearce et al. (2017) . Chemical-specific in vitro data have been... -
Limited chemical structural diversity found to modulate thyroid hormone...
The Tox21 chemical library (8,305 unique structures) was screened in a quantitative high-throughput, cell-based reporter gene assay for TR agonist or antagonist activity. Active... -
CERAPP: Collaborative Estrogen Receptor Activity Prediction Project
Data from a large-scale modeling project called CERAPP (Collaborative Estrogen Receptor Activity Prediction Project) demonstrating using predictive computational models on high-... -
Interactive Chemical Safety for Sustainablity Toxicity Forecaster Dashboard
EPA researchers have been using advances in computational toxicology to address lack of data on the thousands of chemicals. EPA released chemical data on 1,800 chemicals. The...