Angus Sequence Data: Animal 20658

Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.The National Animal Germplasm Program has germplasm for this animal, with the repository number 20658.There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the Collection Dataset. In the diagram, the two reads would correspond to read 1 and read 3.Resources in this dataset:Resource Title: Animal 20658 Sequence Data - SCINet.File Name: Web Page, url: https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32104/tar file containing 14 files. The files are:RAPiD-Genomics_F112_CSU_136201_P001_WA12_i5-515_i7-108_S12_L003_R1_001.fastq.gzRAPiD-Genomics_F112_CSU_136201_P001_WA12_i5-515_i7-108_S12_L003_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S12_L001_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S12_L001_R2_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S148_L002_R1_001.fastq.gzRAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S148_L002_R2_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA12-i5-515-i7-108_S12_L003_R1_001.fastq.gzRAPiD-Genomics-F114-CSU-136201-P001-WA12-i5-515-i7-108_S12_L003_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L001_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L001_R2_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L002_R1_001.fastq.gzRAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L002_R2_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA12_i5-515_i7-108_S367_L002_R1_001.fastq.gzRAPiD-Genomics_F116_CSU_136201_P001_WA12_i5-515_i7-108_S367_L002_R2_001.fastq.gzSCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node32104/See the SCINet File Transfer guide for more information on moving large files: https://scinet.usda.gov/guides/data/datatransferGlobus users: The files can also be accessed through Globus by following this data link. The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.

Data and Resources

Field Value
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier 10.15482/USDA.ADC/1529267
license https://www.usa.gov/publicdomain/label/1.0/
modified 2024-10-24
old-spatial {"type": "Point", "coordinates": [-106.56610600168, 41.222307724193]}
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash 80dc62234e099e881c7fc6c85335f7a2d33f3bd281a031da79c9225070f6c0ad
source_schema_version 1.1
spatial {"type": "Point", "coordinates": [-106.56610600168, 41.222307724193]}
temporal 2012-01-01/2013-12-31
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • animals
  • ars
  • cryopreservation
  • data-gov
  • dna-sequence
  • genetic-diversity
  • germplasm
  • grin
  • np101
isopen False
license_id us-pd
license_title us-pd
maintainer Blackburn, Harvey
maintainer_email harvey.blackburn@usda.gov
metadata_created 2025-09-24T20:02:57.578206
metadata_modified 2025-09-24T20:02:57.578215
notes <p dir="ltr">Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p><p dir="ltr">The National Animal Germplasm Program has germplasm for this animal, with the repository number 20658.</p><p dir="ltr">There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3.</p><p dir="ltr">Resources in this dataset:</p><p dir="ltr">Resource Title: Animal 20658 Sequence Data - SCINet.</p><p dir="ltr">File Name: Web Page, url: <a href="https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32104/" rel="noreferrer" target="_blank">https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32104/</a></p><p dir="ltr">tar file containing 14 files. The files are:</p><ul><li>RAPiD-Genomics_F112_CSU_136201_P001_WA12_i5-515_i7-108_S12_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics_F112_CSU_136201_P001_WA12_i5-515_i7-108_S12_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S12_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S12_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S148_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics-F113-CSU-136201-P001-WA12-i5-515-i7-108_S148_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA12-i5-515-i7-108_S12_L003_R1_001.fastq.gz</li><li>RAPiD-Genomics-F114-CSU-136201-P001-WA12-i5-515-i7-108_S12_L003_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L001_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L001_R2_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F115_CSU_136201_P001_WA12_i5-515_i7-108_S12_L002_R2_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA12_i5-515_i7-108_S367_L002_R1_001.fastq.gz</li><li>RAPiD-Genomics_F116_CSU_136201_P001_WA12_i5-515_i7-108_S367_L002_R2_001.fastq.gz</li></ul><p dir="ltr">SCINet users: The .tar file can be accessed/retrieved with valid SCINet account at this location: /LTS/ADCdatastorage/NAL/published/node32104/</p><p dir="ltr">See the SCINet File Transfer guide for more information on moving large files: <a href="https://scinet.usda.gov/guides/data/datatransfer">https://scinet.usda.gov/guides/data/datatransfer</a></p><p dir="ltr">Globus users: The files can also be accessed through Globus by following <a href="https://app.globus.org/file-manager?origin_id=904c2108-90cf-11e8-9672-0a6d4e044368&origin_path=/LTS/ADCdatastorage/NAL/published/node32104/" rel="noreferrer" target="_blank">this data link.</a> The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.</p><p><br></p>
num_resources 1
num_tags 17
title Angus Sequence Data: Animal 20658