Breedbase

Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see RTBbase.org). There are a number of instances running for diverse crops, including Cassava (https://cassavabase.org, sweet potato (https://sweetpotatobase.org), banana (https://musabase.org), rice (https://ricebase.org), tomato and other Solanaceae (https://solgenomics.net/) and many others. The Breedbase manual provides detailed information about available features.


Resources in this dataset:


  • Resource Title: Website Pointer for Breedbase.

    File Name: Web Page, url: https://breedbase.org/

    Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ.

    Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection.

    Analyze utilities: Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse Other -- Ontology Browser; Compose a New Trait.

Data and Resources

Field Value
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier 10113/AA23234
license https://creativecommons.org/licenses/by/4.0/
modified 2023-12-18
old-spatial {"type": "Polygon", "coordinates": [[[-532.96875, -83.520162383532], [-532.96875, 85.17097012841], [-164.53125, 85.17097012841], [-164.53125, -83.520162383532], [-532.96875, -83.520162383532]]]}
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash 5504565050bc60783c38efff4262b765fd46679a201feda1bcfccb566366bc9b
source_schema_version 1.1
spatial {"type": "Polygon", "coordinates": [[[-532.96875, -83.520162383532], [-532.96875, 85.17097012841], [-164.53125, 85.17097012841], [-164.53125, -83.520162383532], [-532.96875, -83.520162383532]]]}
temporal 2005-01-01/2005-01-01
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • ars
  • breedbase
  • data-gov
  • np301
  • online-database
isopen True
license_id cc-by
license_title Creative Commons Attribution
license_url http://www.opendefinition.org/licenses/cc-by
maintainer Sol Genomics Network
maintainer_email sgn-feedback@sgn.cornell.edu
metadata_created 2025-09-23T15:26:32.178562
metadata_modified 2025-09-23T15:26:32.178570
notes <p>Breedbase is a web-based, comprehensive breeding management and analysis software. It can be used to design field layouts, collect phenotypic information using tablets, support the collection of genotyping samples in a field, store large amounts of high density genotypic information, and provide Genomic Selection related analyses and predictions. Breedbase supports the Breeding Application Programming Interface (BrAPI) standard which defines data objects and methods for exchanging breeding data. The Breedbase system has evolved from the Sol Genomics Network (SGN) and Cassavabase and related sites (see <a href="https://RTBbase.org">RTBbase.org</a>). There are a number of instances running for diverse crops, including Cassava <a href="(https://cassavabase.org)">(https://cassavabase.org</a>, sweet potato (<a href="https://sweetpotatobase.org">https://sweetpotatobase.org</a>), banana (<a href="https://musabase.org">https://musabase.org</a>), rice (<a href="https://ricebase.org">https://ricebase.org</a>), tomato and other Solanaceae (<a href="https://solgenomics.net/">https://solgenomics.net/</a>) and many others. The Breedbase manual provides detailed information about available features. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Website Pointer for Breedbase.</p> <p>File Name: Web Page, url: <a href="https://breedbase.org/">https://breedbase.org/</a> </p><p>Search utilities: Wizard; Accessions and Plots; Organisms; Progenies and Crosses; Field Trials; Genotyping Plates; Genotyping Data Projects; Genotyping Protocols; Traits; Images; People; FAQ.</p> <p>Manage utilities: User Roles; Breeding Programs; Locations; Accessions; Seed Lots; Crosses; Field Trials; Genotyping Trials; Field Book App; Phenotyping; Barcodes; Label Designer; Download; Upload; ODK Data Collection.</p> <p>Analyze utilities: Breeder Tools -- Selection Index; Genomic Selection; Population Structure; Accession Usage; Compare Trials; Graphical Filtering Sequence Analysis -- BLAST; VIGS Tool; HapMap Jbrowse Other -- Ontology Browser; Compose a New Trait.</p> <p></p></li></ul><p></p>
num_resources 1
num_tags 13
title Breedbase