Cold-water coral microbiomes (Lophelia pertusa) from Gulf of Mexico and Atlantic Ocean: raw data

The files in this data release are the raw deoxyribonucleic acid (DNA) sequence files referenced in the submitted journal article by Christina A. Kellogg, Dawn B. Goldsmith and Michael A. Gray entitled "Biogeographic comparison of Lophelia-associated bacterial communities in the western Atlantic reveals conserved core microbiome". They represent a 16S ribosomal ribonucleic acid (rRNA) gene amplicon survey of the coral’s microbiomes completed using Roche 454 pyrosequencing with Titanium series reagents. Samples from the Gulf of Mexico were collected in 2009 and 2010. Samples from the Atlantic Ocean were collected in 2009. The raw data files associated with this study have also been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under Bioproject number PRJNA305617. Minimum information about a marker gene (MIMARKS) compliant metadata is provided in "Lophelia metadata", which is included in the data download file. For more information, please contact Christina Kellogg at the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center, 600 4th Street South, St. Petersburg, Florida, USA, 33701; Telephone: (727) 502-8128; email: ckellogg@usgs.gov.

Data and Resources

Field Value
accessLevel public
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datagov_dedupe_retained 20220725164314
identifier USGS:9ddc617f-9f3c-47e4-b600-60fa5fa8459f
metadata_type geospatial
modified 20201013
old-spatial {"type": "Polygon", "coordinates": [[[88.379637, 26.197992], [88.379637, 29.17027], [ 79.61613, 29.17027], [ 79.61613, 26.197992], [88.379637, 26.197992]]]}
publisher U.S. Geological Survey
publisher_hierarchy Department of the Interior > U.S. Geological Survey
resource-type Dataset
source_datajson_identifier true
source_hash 8bfc7cd333736767bff59fe6b65b35c72ace1fa8
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spatial {"type": "Polygon", "coordinates": [[[88.379637, 26.197992], [88.379637, 29.17027], [ 79.61613, 29.17027], [ 79.61613, 26.197992], [88.379637, 26.197992]]]}
theme {geospatial}
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • amerigeo
  • amerigeoss
  • atlantic-ocean
  • biochemistry
  • biological-classification-lt-animals-lt-cnidarians
  • biological-classification-lt-bacteria
  • biota
  • ckan
  • coelenterates
  • dna-sequencing
  • environment
  • geo
  • geoss
  • gulf-of-mexico
  • marine-biology
  • marine-geology
  • national
  • north-america
  • oceans
  • united-states
  • usgs-9ddc617f-9f3c-47e4-b600-60fa5fa8459f
isopen False
license_id notspecified
license_title License not specified
maintainer Christina A. Kellogg
maintainer_email ckellogg@usgs.gov
metadata_created 2025-11-21T05:40:28.253364
metadata_modified 2025-11-21T05:40:28.253368
notes The files in this data release are the raw deoxyribonucleic acid (DNA) sequence files referenced in the submitted journal article by Christina A. Kellogg, Dawn B. Goldsmith and Michael A. Gray entitled "Biogeographic comparison of Lophelia-associated bacterial communities in the western Atlantic reveals conserved core microbiome". They represent a 16S ribosomal ribonucleic acid (rRNA) gene amplicon survey of the coral’s microbiomes completed using Roche 454 pyrosequencing with Titanium series reagents. Samples from the Gulf of Mexico were collected in 2009 and 2010. Samples from the Atlantic Ocean were collected in 2009. The raw data files associated with this study have also been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under Bioproject number PRJNA305617. Minimum information about a marker gene (MIMARKS) compliant metadata is provided in "Lophelia metadata", which is included in the data download file. For more information, please contact Christina Kellogg at the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center, 600 4th Street South, St. Petersburg, Florida, USA, 33701; Telephone: (727) 502-8128; email: ckellogg@usgs.gov.
num_resources 2
num_tags 21
title Cold-water coral microbiomes (Lophelia pertusa) from Gulf of Mexico and Atlantic Ocean: raw data