CottonGen BLAST

CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from Gossypium species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI.

BLAST Programs:

  • blastn: Search a nucleotide database using a nucleotide query.
  • blastx: Search protein database using a translated nucleotide query.
  • tblastn: Search translated nucleotide database using a protein query.

  • blastp: Search protein database using a protein query.


    Resources in this dataset:

    • Resource Title: Website Pointer for CottonGen BLAST Search.

      File Name: Web Page, url: https://www.cottongen.org/blast

      CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from *Gossypium* species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI. Enter or upload FASTA sequence(s) to query and select BLAST database.

    BLAST Programs:

    • blastn: Search a nucleotide database using a nucleotide query.
    • blastx: Search protein database using a translated nucleotide query.
    • tblastn: Search translated nucleotide database using a protein query.
    • blastp: Search protein database using a protein query.

Data and Resources

Field Value
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier 10113/AA23030
license https://www.usa.gov/publicdomain/label/1.0/
modified 2024-02-13
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash 148af87181b4a50950e6519ac846d21baa3877358ac621170ee560cb47d31b80
source_schema_version 1.1
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • ars
  • cottongen
  • data-gov
  • ncbi-blast
  • np301
  • online-database
isopen False
license_id us-pd
license_title us-pd
maintainer Main, Dorrie
maintainer_email dorrie@wsu.edu
metadata_created 2025-09-24T00:28:31.349825
metadata_modified 2025-09-24T00:28:31.349832
notes <p>CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from <em>Gossypium</em> species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI.</p> <p>BLAST Programs:</p> <ul> <li>blastn: Search a nucleotide database using a nucleotide query.</li> <li>blastx: Search protein database using a translated nucleotide query.</li> <li>tblastn: Search translated nucleotide database using a protein query.</li> <li> <p>blastp: Search protein database using a protein query.</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Website Pointer for CottonGen BLAST Search.</p> <p>File Name: Web Page, url: <a href="https://www.cottongen.org/blast" target="_blank">https://www.cottongen.org/blast</a> </p><p>CottonGen offers BLAST with genome, transcriptome, peptide and marker sequence databases from *Gossypium* species. This can be done using nucleotide sequences or peptide sequences. BLAST functionality is similar to that on NCBI. Enter or upload FASTA sequence(s) to query and select BLAST database. </p></li> </ul> <p>BLAST Programs:</p> <ul> <li>blastn: Search a nucleotide database using a nucleotide query.</li> <li>blastx: Search protein database using a translated nucleotide query.</li> <li>tblastn: Search translated nucleotide database using a protein query.</li> <li>blastp: Search protein database using a protein query.</li></ul><p></p></li> </ul>
num_resources 1
num_tags 14
title CottonGen BLAST