CottonGen CottonCyc Pathways Database

The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:

Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly

This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.

Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly

This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI. Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search.

Data and Resources

Field Value
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier d88235f1-9a2f-4f1f-b07d-4522c723472c
license https://creativecommons.org/publicdomain/zero/1.0/
modified 2019-08-23
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash b3747491bd94931411c126c8f4ff06224361af58
source_schema_version 1.1
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • amerigeo
  • amerigeoss
  • ckan
  • cmap
  • cotton-marker-database
  • cottondb
  • cottongen
  • gbrowse
  • geo
  • geoss
  • national
  • ncbi-blast
  • north-america
  • np301
  • tripal-database
  • united-states
isopen True
license_id cc-zero
license_title Creative Commons CCZero
license_url http://www.opendefinition.org/licenses/cc-zero
maintainer Main, Dorrie
maintainer_email dorrie@wsu.edu
metadata_created 2025-11-23T00:08:03.949160
metadata_modified 2025-11-23T00:08:03.949165
notes <p>The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:</p> <ul> <li>Cyc pathways for JGI v2.0 <em>G. raimondii</em> D5 genome assembly</li> </ul> <p>This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of <em>Gossypium raimondii</em>. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.</p> <ul> <li>Cyc pathways for CGP-BGI v1.0 <em>G. hirsutum</em> AD1 genome assembly</li> </ul> <p>This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of <em>Gossypium hirsutum</em>. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI.</p> <p>Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search.</p>
num_resources 1
num_tags 16
title CottonGen CottonCyc Pathways Database