High-throughput sequencing taxonomic identification and morphology-based taxonomic identification raw data

The files include the presence/absence data by sample for either high-throughput sequencing-based taxonomy or morphology-based taxonomy. The files also include our estimates of the species' biomass in each sample, along with the presence/absence classification by taxonomic method.

This dataset is associated with the following publication: Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, and J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, CANADA, 78(6): 752-764, (2021).

Data and Resources

Field Value
accessLevel public
bureauCode {020:00}
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
identifier https://doi.org/10.23719/1520945
license https://pasteur.epa.gov/license/sciencehub-license.html
modified 2020-12-08
programCode {020:096}
publisher U.S. EPA Office of Research and Development (ORD)
publisher_hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
references {https://doi.org/10.1139/cjfas-2020-0224}
resource-type Dataset
source_datajson_identifier true
source_hash e01e4ac61eae2230f44dff823d0af0e8badd85a5
source_schema_version 1.1
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • amerigeo
  • amerigeoss
  • ckan
  • dna-metabarcoding
  • geo
  • geoss
  • ichthyoplankton
  • invasive-species
  • monitoring
  • national
  • north-america
  • taxonomy
  • united-states
isopen False
license_id other-license-specified
license_title other-license-specified
maintainer Joel Hoffman
maintainer_email hoffman.joel@epa.gov
metadata_created 2025-11-21T21:45:09.586139
metadata_modified 2025-11-21T21:45:09.586143
notes The files include the presence/absence data by sample for either high-throughput sequencing-based taxonomy or morphology-based taxonomy. The files also include our estimates of the species' biomass in each sample, along with the presence/absence classification by taxonomic method. This dataset is associated with the following publication: Hoffman, J., C. Meredith, E. Pilgrim, A. Trebitz, C. Hatzenbuhler, J. Kelly, G. Peterson, J. Lietz, S. Okum, and J. Martinson. Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection. CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES. NRC Research Press, Ottawa, CANADA, 78(6): 752-764, (2021).
num_resources 4
num_tags 13
title High-throughput sequencing taxonomic identification and morphology-based taxonomic identification raw data