Neosho Madtom (Noturus placidus) short read archive and whole genome sequence data

Whole genome sequence data from ten Neosho madtom originating from three geographically separated populations. A Neosho madtom genome was de novo assembled and genome size and content were assessed. Genomic DNA was used to construct one small insert paired-end library per fish with an approximate insert size of 300 bp. The library was constructed following the manufacturer’s protocol with reagents supplied in Illumina’s TruSeq DNA PCR-Free sample preparation kit (#FC-121-3001).

Data and Resources

Field Value
accessLevel public
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datagov_dedupe_retained 20220725124225
identifier USGS:621cdcfed34ec739b2de39cc
metadata_type geospatial
modified 20220228
old-spatial {"type": "Polygon", "coordinates": [[[-96.492999999999, 36.9405], [-96.492999999999, 38.5162], [ -94.997899999998, 38.5162], [ -94.997899999998, 36.9405], [-96.492999999999, 36.9405]]]}
publisher U.S. Geological Survey
publisher_hierarchy Department of the Interior > U.S. Geological Survey
resource-type Dataset
source_datajson_identifier true
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theme {geospatial}
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • amerigeo
  • amerigeoss
  • aquatic-biology
  • biota
  • ckan
  • cottonwood-river
  • genetics
  • genome-assembly
  • geo
  • geoss
  • kansas
  • madtom
  • missouri
  • national
  • neosho-river
  • north-america
  • oklahoma
  • united-states
  • usgs-621cdcfed34ec739b2de39cc
isopen False
license_id notspecified
license_title License not specified
maintainer Mark L Wildhaber
maintainer_email mwildhaber@usgs.gov
metadata_created 2025-11-20T08:50:16.452348
metadata_modified 2025-11-20T08:50:16.452353
notes Whole genome sequence data from ten Neosho madtom originating from three geographically separated populations. A Neosho madtom genome was de novo assembled and genome size and content were assessed. Genomic DNA was used to construct one small insert paired-end library per fish with an approximate insert size of 300 bp. The library was constructed following the manufacturer’s protocol with reagents supplied in Illumina’s TruSeq DNA PCR-Free sample preparation kit (#FC-121-3001).
num_resources 2
num_tags 19
title Neosho Madtom (Noturus placidus) short read archive and whole genome sequence data