Genome In A Bottle - v3.0 Genome Stratifications
Data and Resources
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GRCh37_stratification_post-processing.sh
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GRCh38_stratification_post-processing.sh
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PSA_Y_GRCh38.bed
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PSA_Y_hg19.bed
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gap_38_1thruY_sorted_merged.bed
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gaps-PSAY-README_37.txt
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gaps-PSAY-README_38.txt
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hg38.README_annotation.md
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stratification-file-crosswalk-GRCh37.tsv
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stratification-file-crosswalk-GRCh38.tsv
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GRCh37-FunctionalRegions-README.md
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create_GRCh37_cds_bed.Rmd
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create_GRCh37_cds_bed.pdf
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GRCh37-FunctionalTechnicallyDifficult-README.md
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MRG_falsely_duplicated.sh
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GRCh37-GCcontent-README.md
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seqtk_gc.sh
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GRCh37-GenomeSpecific-README.md
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GRCh37_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh
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GRCh37_HG001_v4.2.1_GenomeSpecific_config.yaml
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GRCh37_HG007_v4.2.1_GenomeSpecific_config.yaml
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bedtools.yaml
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vcflib.yaml
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FindSimpleRepeats_v2.sh
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GRCh37_HG002_v4.2.1_GenomeSpecific_config.yaml
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GRCh37_HG003_v4.2.1_GenomeSpecific_config.yaml
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GRCh37-LowComplexity-README.md
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GRCh37_SimpleRepeat_homopolymer_gt20.sh
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GRCh37_SimpleRepeat_imperfecthomoplgt20_slop5.sh
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findSimpleRegions_quad.py
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GRCh37-OtherDifficult-README.md
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merge_difficult_regions_GRCh37_2.01.sh
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GIAB-v3.0-stratifications-README.md
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GRCh37_HG004_v4.2.1_GenomeSpecific_config.yaml
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GRCh37_HG005_v4.2.1_GenomeSpecific_config.yaml
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GRCh37_HG006_v4.2.1_GenomeSpecific_config.yaml
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GIAB-stratifications-post-processing-README.md
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create_GRCh38_cds_bed.Rmd
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create_GRCh38_cds_bed.pdf
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GRCh38-FunctionalTechnicallyDifficult-README.md
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MRG_falsely_duplicated.sh
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GRCh38-GCcontent-README.md
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grch38_seqtk_gc.sh
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GRCh38-GenomeSpecific-README.md
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GRCh38_HG002_hifiasmv0.11_ComplexVar_in_TRgt100.sh
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GRCh38_HG001_v4.2.1_GenomeSpecific_config.yaml
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GRCh38_HG002_v4.2.1_GenomeSpecific_config.yaml
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GRCh38_HG003_v4.2.1_GenomeSpecific_config.yaml
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GRCh38_HG004_v4.2.1_GenomeSpecific_config.yaml
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GRCh37-SegDups-README.md
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GRCh38_HG005_v4.2.1_GenomeSpecific_config.yaml
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GRCh38_HG006_v4.2.1_GenomeSpecific_config.yaml
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GRCh37-mappability-README.md
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make_all_and_notin_beds.sh
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run_GEM_mappability.sh
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GRCh37-union-README.md
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merge_difficult_regions_GRCh37_2.01.sh
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GRCh38-FunctionalRegions-README.md
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GRCh38_HG007_v4.2.1_GenomeSpecific_config.yaml
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bedtools.yaml
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vcflib.yaml
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GRCh38_SimpleRepeat_imperfecthomoplgt20_slop5.sh
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GRCh38-LowComplexity-README.md
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GRCh38_SimpleRepeat_homopolymer_gt20.sh
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FindSimpleRepeats_GRCh38_v2.sh
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findSimpleRegions_quad.py
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GRCh38-OtherDifficult-README.md
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merge_difficult_regions_GRCh38_2.01.sh
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GRCh38-SegDups-README.md
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GRCh38-ancestry-README.md
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GRCh38-mappability-README.md
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run_GEM_mappability_GRCh38.sh
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GRCh38-union-README.md
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run_GEM_mappability_sort_GRCh38.sh
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merge_difficult_regions_GRCh38_2.01.sh
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v3.0-stratifications-GRCh37.tar.gz
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v3.0-stratifications-GRCh38.tar.gz
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GIAB-stratifications-validation-README.md
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human.b37.1_22XY.genome.sorted_noNs_noPSAY_merged.bed
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human.hg38.1_22XY.genome.sorted_noNs_noPSAY_merged.bed
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v3.0-stratfications-info.csv
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v3.0-stratification_validation.Rmd
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v3.0-stratification_validation.pdf
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DOI Access for Genome In A Bottle - v3.0...
| Field | Value |
|---|---|
| accessLevel | public |
| bureauCode | {006:55} |
| catalog_@context | https://project-open-data.cio.gov/v1.1/schema/data.json |
| catalog_conformsTo | https://project-open-data.cio.gov/v1.1/schema |
| catalog_describedBy | https://project-open-data.cio.gov/v1.1/schema/catalog.json |
| identifier | ark:/88434/mds2-2499 |
| issued | 2021-12-02 |
| landingPage | https://data.nist.gov/od/id/mds2-2499 |
| language | {en} |
| license | https://www.nist.gov/open/license |
| modified | 2021-11-08 00:00:00 |
| programCode | {006:045} |
| publisher | National Institute of Standards and Technology |
| resource-type | Dataset |
| source_datajson_identifier | true |
| source_hash | 0e0c2408291367b49eb8ee1925652038d21fba9e |
| source_schema_version | 1.1 |
| theme | {"Health:Precision medicine"} |
| Groups |
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| Tags |
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| isopen | False |
| license_id | other-license-specified |
| license_title | other-license-specified |
| maintainer | Justin Zook |
| maintainer_email | justin.zook@nist.gov |
| metadata_created | 2025-11-22T05:06:51.910081 |
| metadata_modified | 2025-11-22T05:06:51.910085 |
| notes | These v3.0 stratification BED files from the Global Alliance for Genomic Health (GA4GH) Benchmarking Team, the Genome in a Bottle Consortium and the Telomere-to-Telomere Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls in challenging and targeted regions of the the genome. v3.0 stratifications contain new and revised stratification files and replace v2.0 stratifications. |
| num_resources | 221 |
| num_tags | 9 |
| title | Genome In A Bottle - v3.0 Genome Stratifications |