Data from: Genetic mapping and QTL analysis for peanut smut resistance

This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus Thecaphora frezii. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible Arachis hypogaea subsp.hypogaea × resistant synthetic amphidiploid [(A. correntina × A. cardenasii) × A. batizocoi]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array.

For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov Resources in this dataset:Resource Title: RILs of the mapping population. File Name: RIL_population.JPGResource Title: Data Dictionary. File Name: readme.txtResource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt . File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zipResource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array. Resource Software Recommended: Axiom_Arachis2,url: https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf. File Name: SD02_core_RILs_SNPs_AxiomArachis2.vcf.zipResource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors.

Data e Risorse

Campo Valore
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier 10.15482/USDA.ADC/1522387
license https://www.usa.gov/publicdomain/label/1.0/
modified 2024-02-16
old-spatial {"type": "Point", "coordinates": [-63.967895507813, -32.793431700307]}
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash 41db64739e86174a13e3a9d63f5e2eaf7f8499297a8538e2e81527d3af8fdd7b
source_schema_version 1.1
spatial {"type": "Point", "coordinates": [-63.967895507813, -32.793431700307]}
temporal 2016-01-01/2018-12-31
Gruppi
  • AmeriGEOSS
  • National Provider
  • North America
Tag
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • arachis
  • arachis-hypogaea
  • arachis_axiom2-snp-array
  • ars
  • data-gov
  • np301
  • np303
  • peanut
  • peanut-smut
  • smut-resistance
  • snp
isopen False
license_id us-pd
license_title us-pd
maintainer Arias, Renee S.
maintainer_email Renee.Arias@usda.gov
metadata_created 2025-09-24T19:24:56.487534
metadata_modified 2025-09-24T19:24:56.487545
notes <p>This collection contains supplementary information for the manuscript “Genetic mapping and QTL analysis for peanut smut resistance”, which reports the genetic map and quantitative trait loci associated with resistance to peanut smut, a disease caused by the fungus <em>Thecaphora frezii</em>. The information includes genotyping data of a 103 recombinant inbred line (RIL) population {susceptible <em>Arachis hypogaea</em> subsp.<em>hypogaea</em> × resistant synthetic amphidiploid [(<em>A. correntina</em> × <em>A. cardenasii</em>) × <em>A. batizocoi</em>]⁴ˣ} and parental lines, generated with the Axiom_Arachis2 SNP array. </p> <p><br></p> <p>For more information about this dataset contact: Renee Arias: Renee.Arias@usda.gov or Alicia Massa: Alicia.Massa@usda.gov </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: RILs of the mapping population.</p> <p>File Name: RIL_population.JPG</p></li><br><li><p>Resource Title: Data Dictionary.</p> <p>File Name: readme.txt</p></li><br><li><p>Resource Title: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt .</p> <p>File Name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt.zip</p><p>Resource Description: Supplementary Data 1: SNP genotypes as called by the Axiom Analysis Suite File name: SD01_RILs_SNPs_whole_Axiom_Arachis2.txt Single nucleotide polymorphism genotyping of a 103 RIL population and parental lines generated with the Arachis_Axiom2 SNP array. </p><p>Resource Software Recommended: Axiom_Arachis2,url: <a href="https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html">https://www.thermofisher.com/us/en/home/life-science/microarray-analysis/microarray-analysis-instruments-software-services/microarray-analysis-software/axiom-analysis-suite.html</a> </p></li><br><li><p>Resource Title: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf.</p> <p>File Name: SD02_core_RILs_SNPs_Axiom<em>Arachis2.vcf</em>.zip</p><p>Resource Description: Supplementary Data 2: Genotyping calls in VCF format File name: SD02_RILs_SNPs_whole_Axiom_Arachis2.vcf Core SNP set used to characterize the RIL population and progenitors. </p></li></ul><p></p>
num_resources 4
num_tags 19
title Data from: Genetic mapping and QTL analysis for peanut smut resistance