Leptinotarsa decemlineata genome annotations v0.5.3

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Leptinotarsa decemlineata gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication. NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use Resources in this dataset:Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0. File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gzResource Description: The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:

LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.

LDEC.CDS.fna.gz. CDS sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

LDEC.faa.gz Amino acid sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

LDEC.fna.gz cDNA sequences of Leptinotarsa decemlineata genome annotations v0.5.3.

LDEC.Models.gff3.gz Gff3 of all gene predictions of Leptinotarsa decemlineata genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.

Data e Risorse

Campo Valore
accessLevel public
bureauCode {005:18}
catalog_@context https://project-open-data.cio.gov/v1.1/schema/catalog.jsonld
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
catalog_describedBy https://project-open-data.cio.gov/v1.1/schema/catalog.json
identifier 10.15482/USDA.ADC/1391716
license https://creativecommons.org/licenses/by-sa/4.0/
modified 2025-04-30
programCode {005:040}
publisher Agricultural Research Service
resource-type Dataset
source_datajson_identifier true
source_hash c8cfe390db2de014987f19dea5de8e023ef2562721aa431121472c3c5744615f
source_schema_version 1.1
temporal 2014-01-01/2014-01-01
Gruppi
  • AmeriGEOSS
  • National Provider
  • North America
Tag
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • ars
  • colorado-potato-beetle
  • data-gov
  • i5k
  • insects
  • leptinotarsa-decemlineata
isopen True
license_id cc-by-sa
license_title Creative Commons Attribution Share-Alike
license_url http://www.opendefinition.org/licenses/cc-by-sa
maintainer Schoville, Sean
maintainer_email sean.schoville@wisc.edu
metadata_created 2025-09-23T17:48:52.652763
metadata_modified 2025-09-23T17:48:52.652769
notes <p>The <em>Leptinotarsa decemlineata</em> genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the <em>Leptinotarsa decemlineata</em> gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.</p> <p>NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.</p> <p>If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: <a href="https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use">https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use</a></p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0.</p> <p>File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gz</p><p>Resource Description: </p><p>The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:</p> <p>LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.</p> <p>LDEC.CDS.fna.gz. CDS sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.faa.gz Amino acid sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.fna.gz cDNA sequences of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3.</p> <p>LDEC.Models.gff3.gz Gff3 of all gene predictions of <em>Leptinotarsa decemlineata</em> genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.</p> <p></p></li></ul><p></p>
num_resources 1
num_tags 14
title Leptinotarsa decemlineata genome annotations v0.5.3