A cross-platform approach to characterize and screen potential neurovascular unit toxicants

Development of the neurovascular unit (NVU) is a complex, multistage process that requires orchestrated cell signaling mechanisms across several cell types and ultimately results in the formation of the blood-brain barrier. Typical high-throughput screening (HTS) assays investigate single biochemical or single cell responses following chemical insult. As the NVU comprises multiple cell types interacting at various stages of development, a methodology for combining high-throughput results across pertinent cell-based assays is needed to investigate potential chemical-induced disruption to the development of this complex cell system. To this end, we developed a novel method for screening putative NVU disruptors across diverse assay platforms to predict chemical perturbation of the developing NVU. Here, HTS assay results measuring chemical-induced perturbations to cellular key events across angiogenic and neurogenic outcomes were combined to create a cell-based prioritization of NVU hazard. Using activity from each biological outcome, chemicals were grouped into similar modes of action and used to train a logistic regression literature model. This model utilizes the chemical-specific pairwise mutual information score for PubMed MeSH annotations to represent how often a chemical was shown to produce a specific outcome in the published literature space. Taken together, this study presents a methodology to investigate NVU developmental hazard using cell-based HTS assays and literature evidence to prioritize screening of putative NVU disruptors. The results from these screening efforts demonstrate how chemicals that represent a range of putative vascular disrupting compound (pVDC) scores based on angiogenic endpoints can also produce effects on neurogenic outcomes such as neurite outgrowth, neuroprogenitor/neural crest migration, representing an additional method for understanding the range of possible modes of action for disruption of the developing NVU.

This dataset is associated with the following publication: Zurlinden, T., K. Saili, N. Baker, T. Toimela, T. Heinonen, and T. Knudsen. A cross-platform approach to characterize and screen potential neurovascular unit toxicants. REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 96(September 2020): 300-315, (2020).

Data and Resources

Field Value
accessLevel public
bureauCode {020:00}
catalog_conformsTo https://project-open-data.cio.gov/v1.1/schema
identifier https://doi.org/10.23719/1518764
license https://pasteur.epa.gov/license/sciencehub-license.html
modified 2019-11-01
programCode {020:095}
publisher U.S. EPA Office of Research and Development (ORD)
publisher_hierarchy U.S. Government > U.S. Environmental Protection Agency > U.S. EPA Office of Research and Development (ORD)
references {https://doi.org/10.1016/j.reprotox.2020.06.010}
resource-type Dataset
source_datajson_identifier true
source_hash 655a535d91a1c4137aec70a08c1e7d5c4542f8d8
source_schema_version 1.1
Groups
  • AmeriGEOSS
  • National Provider
  • North America
Tags
  • AmeriGEO
  • AmeriGEOSS
  • CKAN
  • GEO
  • GEOSS
  • National
  • North America
  • United States
  • high-throughput-screening
  • neurovascular-unit
  • point-wise-mutual-information
  • tipping-points
  • vembryo
  • virtual-embryo
  • virtual-tissues
isopen False
license_id other-license-specified
license_title other-license-specified
maintainer Thomas Knudsen
maintainer_email knudsen.thomas@epa.gov
metadata_created 2025-09-23T20:56:47.742259
metadata_modified 2025-09-23T20:56:47.742265
notes Development of the neurovascular unit (NVU) is a complex, multistage process that requires orchestrated cell signaling mechanisms across several cell types and ultimately results in the formation of the blood-brain barrier. Typical high-throughput screening (HTS) assays investigate single biochemical or single cell responses following chemical insult. As the NVU comprises multiple cell types interacting at various stages of development, a methodology for combining high-throughput results across pertinent cell-based assays is needed to investigate potential chemical-induced disruption to the development of this complex cell system. To this end, we developed a novel method for screening putative NVU disruptors across diverse assay platforms to predict chemical perturbation of the developing NVU. Here, HTS assay results measuring chemical-induced perturbations to cellular key events across angiogenic and neurogenic outcomes were combined to create a cell-based prioritization of NVU hazard. Using activity from each biological outcome, chemicals were grouped into similar modes of action and used to train a logistic regression literature model. This model utilizes the chemical-specific pairwise mutual information score for PubMed MeSH annotations to represent how often a chemical was shown to produce a specific outcome in the published literature space. Taken together, this study presents a methodology to investigate NVU developmental hazard using cell-based HTS assays and literature evidence to prioritize screening of putative NVU disruptors. The results from these screening efforts demonstrate how chemicals that represent a range of putative vascular disrupting compound (pVDC) scores based on angiogenic endpoints can also produce effects on neurogenic outcomes such as neurite outgrowth, neuroprogenitor/neural crest migration, representing an additional method for understanding the range of possible modes of action for disruption of the developing NVU. This dataset is associated with the following publication: Zurlinden, T., K. Saili, N. Baker, T. Toimela, T. Heinonen, and T. Knudsen. A cross-platform approach to characterize and screen potential neurovascular unit toxicants. REPRODUCTIVE TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 96(September 2020): 300-315, (2020).
num_resources 1
num_tags 15
title A cross-platform approach to characterize and screen potential neurovascular unit toxicants